Variant report

Variant	rs12208176
Chromosome Location	chr6:37178897-37178898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36986055..36987477-chr6:37177799..37178902,22	MCF-7	breast:
2	chr6:36985644..36987482-chr6:37177455..37178899,11	MCF-7	breast:
3	chr6:36984139..36992310-chr6:37174438..37180666,13	K562	blood:
4	chr6:37176912..37179882-chr6:37181319..37183621,3	K562	blood:
5	chr6:37177179..37179979-chr6:37232016..37233735,2	K562	blood:
6	chr6:37137029..37138743-chr6:37176184..37178998,2	K562	blood:
7	chr6:37176193..37179030-chr6:37187098..37189200,2	K562	blood:
8	chr6:36985027..36989561-chr6:37176409..37180028,4	K562	blood:
9	chr6:36985713..36987315-chr6:37177177..37178923,41	K562	blood:
10	chr6:36989705..36991355-chr6:37177906..37180017,2	K562	blood:
11	chr6:37001172..37003656-chr6:37177575..37179330,2	K562	blood:
12	chr6:37139248..37140979-chr6:37178268..37180778,2	K562	blood:
13	chr6:37149356..37151039-chr6:37177346..37179658,2	K562	blood:
14	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
15	chr6:36989194..36990306-chr6:37177960..37178938,5	MCF-7	breast:
16	chr6:37136338..37142901-chr6:37174353..37180910,16	K562	blood:
17	chr6:36995372..37000472-chr6:37174362..37180086,7	K562	blood:
18	chr6:36989570..36992539-chr6:37178142..37179821,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10223567	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202063	1.00[MKK][hapmap]
rs12210895	0.83[MKK][hapmap]
rs12212132	1.00[ASN][1000 genomes]
rs7739790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap]
rs9470541	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
3	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:37176000-37182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:37176200-37179000	Enhancers	Dnd41	blood
6	chr6:37176200-37179800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:37176200-37180000	Enhancers	K562	blood
8	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
9	chr6:37178000-37179000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:37178200-37179000	Bivalent Enhancer	HepG2	liver
11	chr6:37178200-37184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:37178400-37180000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:37178600-37180800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:37178800-37180000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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