Variant report

Variant	rs9470541
Chromosome Location	chr6:37178168-37178169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36986055..36987477-chr6:37177799..37178902,22	MCF-7	breast:
2	chr6:36985644..36987482-chr6:37177455..37178899,11	MCF-7	breast:
3	chr6:36984139..36992310-chr6:37174438..37180666,13	K562	blood:
4	chr6:36950922..36953739-chr6:37176914..37178749,2	MCF-7	breast:
5	chr6:37176912..37179882-chr6:37181319..37183621,3	K562	blood:
6	chr6:37177179..37179979-chr6:37232016..37233735,2	K562	blood:
7	chr6:37137029..37138743-chr6:37176184..37178998,2	K562	blood:
8	chr6:37176193..37179030-chr6:37187098..37189200,2	K562	blood:
9	chr6:37176282..37178412-chr6:37181921..37184368,2	K562	blood:
10	chr6:37018986..37019867-chr6:37177959..37178857,6	MCF-7	breast:
11	chr6:36985027..36989561-chr6:37176409..37180028,4	K562	blood:
12	chr6:36985713..36987315-chr6:37177177..37178923,41	K562	blood:
13	chr6:36996711..36997700-chr6:37177886..37178877,18	K562	blood:
14	chr6:36989705..36991355-chr6:37177906..37180017,2	K562	blood:
15	chr6:37013870..37015884-chr6:37176844..37178399,2	K562	blood:
16	chr6:36989160..36990097-chr6:37177684..37178889,6	MCF-7	breast:
17	chr6:37001172..37003656-chr6:37177575..37179330,2	K562	blood:
18	chr6:37151215..37153686-chr6:37176476..37178386,2	K562	blood:
19	chr6:36988553..36990129-chr6:37177906..37178828,15	K562	blood:
20	chr6:37149356..37151039-chr6:37177346..37179658,2	K562	blood:
21	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
22	chr6:36986111..36987939-chr6:37176127..37178450,2	MCF-7	breast:
23	chr6:36733976..36734638-chr6:37177966..37178508,3	K562	blood:
24	chr6:36989194..36990306-chr6:37177960..37178938,5	MCF-7	breast:
25	chr6:37018587..37019913-chr6:37177834..37178576,6	K562	blood:
26	chr6:37136338..37142901-chr6:37174353..37180910,16	K562	blood:
27	chr6:36995372..37000472-chr6:37174362..37180086,7	K562	blood:
28	chr6:36989570..36992539-chr6:37178142..37179821,2	MCF-7	breast:
29	chr6:36987509..36988444-chr6:37177937..37178601,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction
ENSG00000137193	Chromatin interaction
ENSG00000252687	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10223567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208176	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212132	1.00[ASN][1000 genomes]
rs55894055	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7739790	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.81[EUR][1000 genomes]
rs9470543	0.93[LWK][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9470541	ETV7	cis	parietal	SCAN
rs9470541	FKBP5	cis	cerebellum	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
3	chr6:37173000-37178400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:37173600-37178200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:37173600-37178200	Weak transcription	A549	lung
7	chr6:37173800-37178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:37174600-37178400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:37174800-37178400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:37175000-37178600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:37175200-37178600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:37175200-37178800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:37175400-37178400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr6:37175400-37178600	Enhancers	Primary T cells from cord blood	blood
15	chr6:37176000-37178400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:37176000-37182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:37176200-37178200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:37176200-37178800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:37176200-37179000	Enhancers	Dnd41	blood
20	chr6:37176200-37179800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:37176200-37180000	Enhancers	K562	blood
22	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
23	chr6:37177200-37178600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:37177400-37178400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:37177600-37178200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:37177800-37178400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:37177800-37178400	Enhancers	Fetal Heart	heart
28	chr6:37177800-37178400	Enhancers	Fetal Muscle Leg	muscle
29	chr6:37177800-37178400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:37177800-37178800	Enhancers	Colon Smooth Muscle	Colon
31	chr6:37178000-37178200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:37178000-37178200	Enhancers	Placenta	Placenta
33	chr6:37178000-37178200	Enhancers	Pancreas	Pancrea
34	chr6:37178000-37178400	Enhancers	Brain Cingulate Gyrus	brain
35	chr6:37178000-37178400	Enhancers	Brain Hippocampus Middle	brain
36	chr6:37178000-37178400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr6:37178000-37178400	Enhancers	Fetal Kidney	kidney
38	chr6:37178000-37178400	Enhancers	Fetal Muscle Trunk	muscle
39	chr6:37178000-37178600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr6:37178000-37178600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr6:37178000-37178600	Enhancers	Duodenum Mucosa	Duodenum
42	chr6:37178000-37178600	Enhancers	Osteobl	bone
43	chr6:37178000-37178800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr6:37178000-37178800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:37178000-37178800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:37178000-37178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:37178000-37178800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr6:37178000-37178800	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:37178000-37178800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:37178000-37178800	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links