Variant report

Variant	rs10224007
Chromosome Location	chr7:146078338-146078339
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146077123..146080368-chr7:146083154..146084711,3	K562	blood:
2	chr7:146077363..146079072-chr7:146098860..146101793,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10227977	1.00[ASN][1000 genomes]
rs10231549	1.00[ASN][1000 genomes]
rs10231672	1.00[ASN][1000 genomes]
rs10235457	1.00[CEU][hapmap]
rs10237250	0.87[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs10242387	0.87[CEU][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap]
rs10246857	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs10256837	1.00[ASN][1000 genomes]
rs10258224	0.85[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273261	1.00[ASN][1000 genomes]
rs10275558	1.00[ASN][1000 genomes]
rs10280011	1.00[ASN][1000 genomes]
rs10487935	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11971943	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs1358079	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1358082	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358083	0.87[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403008	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs1403009	1.00[ASN][1000 genomes]
rs1403010	1.00[ASN][1000 genomes]
rs1526162	1.00[ASN][1000 genomes]
rs1639478	0.87[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639479	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639485	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639487	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639489	0.87[CEU][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs17170092	0.85[CEU][hapmap]
rs1718073	1.00[ASN][1000 genomes]
rs1718074	1.00[ASN][1000 genomes]
rs1718075	0.87[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718077	0.87[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718078	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718080	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718082	1.00[ASN][1000 genomes]
rs1724526	1.00[ASN][1000 genomes]
rs1724527	0.87[CEU][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs1724529	1.00[ASN][1000 genomes]
rs1724531	1.00[ASN][1000 genomes]
rs1724535	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1724536	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2535752	1.00[ASN][1000 genomes]
rs28687551	1.00[ASN][1000 genomes]
rs60409856	1.00[ASN][1000 genomes]
rs73738703	1.00[ASN][1000 genomes]
rs73738715	1.00[ASN][1000 genomes]
rs73738756	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889388	chr7:145998111-146082957	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv524528	chr7:145998111-146086322	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv608929	chr7:146020936-146082957	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv608930	chr7:146025509-146081452	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10224007	TPK1	cis	cerebellum	SCAN
rs10224007	CNTNAP2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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