Variant report

Variant	rs1639478
Chromosome Location	chr7:146091862-146091863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10224007	0.87[CEU][hapmap]
rs10227977	1.00[ASN][1000 genomes]
rs10231549	1.00[ASN][1000 genomes]
rs10231672	1.00[ASN][1000 genomes]
rs10235457	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs10237250	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs10242387	1.00[CEU][hapmap]
rs10246857	1.00[CEU][hapmap]
rs10256837	1.00[ASN][1000 genomes]
rs10258224	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273261	1.00[ASN][1000 genomes]
rs10275558	1.00[ASN][1000 genomes]
rs10280011	1.00[ASN][1000 genomes]
rs10487935	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1358079	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1358082	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358083	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403008	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs1403009	1.00[ASN][1000 genomes]
rs1403010	1.00[ASN][1000 genomes]
rs1526162	1.00[ASN][1000 genomes]
rs1639479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639485	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639487	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1639489	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1718073	1.00[ASN][1000 genomes]
rs1718074	1.00[ASN][1000 genomes]
rs1718075	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718077	1.00[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718078	0.85[CEU][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718080	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1718082	1.00[ASN][1000 genomes]
rs1724526	1.00[ASN][1000 genomes]
rs1724527	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1724529	1.00[ASN][1000 genomes]
rs1724531	1.00[ASN][1000 genomes]
rs1724535	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1724536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2535752	1.00[ASN][1000 genomes]
rs28687551	1.00[ASN][1000 genomes]
rs60409856	1.00[ASN][1000 genomes]
rs73738703	1.00[ASN][1000 genomes]
rs73738715	1.00[ASN][1000 genomes]
rs73738756	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146089000-146109400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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