Variant report

Variant	rs1022514
Chromosome Location	chr6:133790391-133790392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11154730	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.93[ASN][1000 genomes]
rs212774	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs34950020	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3777866	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs598286	0.81[AFR][1000 genomes]
rs7764488	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9321402	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373056	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385649	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493627	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133780800-133796800	Weak transcription	NHLF	lung
3	chr6:133782000-133790400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133782000-133811600	Weak transcription	A549	lung
5	chr6:133782400-133806400	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:133784000-133813000	Weak transcription	HSMMtube	muscle
7	chr6:133786600-133812400	Weak transcription	Fetal Kidney	kidney
8	chr6:133786800-133807400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:133787400-133790400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
11	chr6:133789000-133790800	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:133789200-133790800	Strong transcription	Hela-S3	cervix
13	chr6:133789400-133790400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:133789600-133790800	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:133789800-133791400	Weak transcription	NH-A	brain
16	chr6:133790000-133791000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:133790200-133796800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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