Variant report

Variant	rs9321402
Chromosome Location	chr6:133794511-133794512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1022514	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11154730	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[ASN][1000 genomes]
rs212771	0.80[AFR][1000 genomes]
rs212774	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs34950020	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777866	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs598286	0.84[AFR][1000 genomes]
rs7764488	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9373056	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9493627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133780800-133796800	Weak transcription	NHLF	lung
3	chr6:133782000-133811600	Weak transcription	A549	lung
4	chr6:133782400-133806400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:133784000-133813000	Weak transcription	HSMMtube	muscle
6	chr6:133786600-133812400	Weak transcription	Fetal Kidney	kidney
7	chr6:133786800-133807400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
9	chr6:133790200-133796800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133790400-133794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:133790800-133796200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:133790800-133807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:133790800-133821600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:133791000-133794800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:133794200-133795600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:133794200-133797200	Strong transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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