Variant report

Variant	rs10225915
Chromosome Location	chr7:84574909-84574910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10225668	1.00[AFR][1000 genomes]
rs10236050	1.00[AFR][1000 genomes]
rs10237215	1.00[AFR][1000 genomes]
rs10239164	0.88[AFR][1000 genomes]
rs10246603	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10252131	1.00[YRI][hapmap]
rs10256659	1.00[AFR][1000 genomes]
rs10260772	1.00[AFR][1000 genomes]
rs10276383	1.00[AFR][1000 genomes]
rs10277919	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28560235	1.00[AFR][1000 genomes]
rs28580786	1.00[AFR][1000 genomes]
rs55985914	1.00[AFR][1000 genomes]
rs57860957	0.88[AFR][1000 genomes]
rs60104581	1.00[AFR][1000 genomes]
rs60120702	0.81[AFR][1000 genomes]
rs60332084	1.00[AFR][1000 genomes]
rs73703757	1.00[AFR][1000 genomes]
rs73703760	0.81[AFR][1000 genomes]
rs73711625	1.00[AFR][1000 genomes]
rs73711633	1.00[AFR][1000 genomes]
rs73711634	1.00[AFR][1000 genomes]
rs73713911	1.00[AFR][1000 genomes]
rs73713921	1.00[AFR][1000 genomes]
rs73713922	1.00[AFR][1000 genomes]
rs73713925	1.00[AFR][1000 genomes]
rs73713926	1.00[AFR][1000 genomes]
rs73713935	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1032638	chr7:84550206-84603392	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84571400-84576400	Weak transcription	Aorta	Aorta

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