Variant report
| Variant | rs73713911 |
|---|---|
| Chromosome Location | chr7:84598697-84598698 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:84579633..84582390-chr7:84598433..84600288,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10225668 | 1.00[AFR][1000 genomes] |
| rs10225915 | 1.00[AFR][1000 genomes] |
| rs10236050 | 1.00[AFR][1000 genomes] |
| rs10237215 | 1.00[AFR][1000 genomes] |
| rs10239164 | 0.88[AFR][1000 genomes] |
| rs10246603 | 1.00[AFR][1000 genomes] |
| rs10256659 | 1.00[AFR][1000 genomes] |
| rs10260772 | 1.00[AFR][1000 genomes] |
| rs10276383 | 1.00[AFR][1000 genomes] |
| rs10277919 | 1.00[AFR][1000 genomes] |
| rs28560235 | 1.00[AFR][1000 genomes] |
| rs28580786 | 1.00[AFR][1000 genomes] |
| rs55985914 | 1.00[AFR][1000 genomes] |
| rs57860957 | 0.88[AFR][1000 genomes] |
| rs60104581 | 1.00[AFR][1000 genomes] |
| rs60120702 | 0.81[AFR][1000 genomes] |
| rs60332084 | 1.00[AFR][1000 genomes] |
| rs73703757 | 1.00[AFR][1000 genomes] |
| rs73703760 | 0.81[AFR][1000 genomes] |
| rs73711625 | 1.00[AFR][1000 genomes] |
| rs73711633 | 1.00[AFR][1000 genomes] |
| rs73711634 | 1.00[AFR][1000 genomes] |
| rs73713921 | 1.00[AFR][1000 genomes] |
| rs73713922 | 1.00[AFR][1000 genomes] |
| rs73713925 | 1.00[AFR][1000 genomes] |
| rs73713926 | 1.00[AFR][1000 genomes] |
| rs73713935 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949446 | chr7:84003501-84763823 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2422324 | chr7:84530290-84944913 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032638 | chr7:84550206-84603392 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:84598200-84599200 | Enhancers | Fetal Stomach | stomach |
