Variant report

Variant	rs10277919
Chromosome Location	chr7:84643242-84643243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10225668	1.00[AFR][1000 genomes]
rs10225915	1.00[AFR][1000 genomes]
rs10236050	1.00[AFR][1000 genomes]
rs10237215	1.00[AFR][1000 genomes]
rs10239164	0.88[AFR][1000 genomes]
rs10246603	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10252131	1.00[YRI][hapmap]
rs10256659	1.00[AFR][1000 genomes]
rs10260772	1.00[AFR][1000 genomes]
rs10276383	1.00[AFR][1000 genomes]
rs28560235	1.00[AFR][1000 genomes]
rs28580786	1.00[AFR][1000 genomes]
rs55985914	1.00[AFR][1000 genomes]
rs57860957	0.88[AFR][1000 genomes]
rs60104581	1.00[AFR][1000 genomes]
rs60120702	0.81[AFR][1000 genomes]
rs60332084	1.00[AFR][1000 genomes]
rs73703757	1.00[AFR][1000 genomes]
rs73703760	0.81[AFR][1000 genomes]
rs73711625	1.00[AFR][1000 genomes]
rs73711633	1.00[AFR][1000 genomes]
rs73711634	1.00[AFR][1000 genomes]
rs73713911	1.00[AFR][1000 genomes]
rs73713921	1.00[AFR][1000 genomes]
rs73713922	1.00[AFR][1000 genomes]
rs73713925	1.00[AFR][1000 genomes]
rs73713926	1.00[AFR][1000 genomes]
rs73713935	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84632600-84644400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:84634200-84654000	Weak transcription	Fetal Kidney	kidney
3	chr7:84640600-84645200	Weak transcription	Fetal Heart	heart
4	chr7:84641400-84643400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:84641600-84645000	Weak transcription	Pancreas	Pancrea
6	chr7:84643000-84644000	Active TSS	Fetal Muscle Leg	muscle
7	chr7:84643000-84644800	Strong transcription	Fetal Lung	lung
8	chr7:84643000-84654000	Weak transcription	HUVEC	blood vessel
9	chr7:84643200-84643400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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