Variant report

Variant	rs10226082
Chromosome Location	chr7:21902235-21902236
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10485987	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs12154430	0.83[CEU][hapmap]
rs12700315	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700316	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs17145743	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs35161061	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4722067	0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55692559	0.87[EUR][1000 genomes]
rs6959457	0.90[CEU][hapmap]
rs757132	0.83[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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