Variant report

Variant	rs17145743
Chromosome Location	chr7:21906584-21906585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10226082	0.84[CEU][hapmap]
rs10485987	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11767041	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12154430	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12700315	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12700316	1.00[CEU][hapmap]
rs55692559	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6959457	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs757132	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21904600-21907200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:21904600-21910400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:21904600-21910600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:21904800-21907400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:21904800-21908000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:21905000-21906600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:21905000-21910000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:21905000-21910200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:21905000-21910800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:21905200-21908000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:21905200-21910000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:21905200-21910200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:21905400-21906600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:21905600-21906800	Enhancers	Fetal Heart	heart
15	chr7:21905600-21916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:21905800-21916200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr7:21906000-21906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:21906000-21908800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:21906200-21906600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:21906400-21908800	Enhancers	Brain Germinal Matrix	brain
21	chr7:21906400-21909600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:21906400-21910200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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