Variant report

Variant	rs10229458
Chromosome Location	chr7:78353733-78353734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10226116	0.89[YRI][hapmap]
rs10228359	0.82[EUR][1000 genomes]
rs10228963	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10229438	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10230190	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10230478	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10230501	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10231465	0.82[EUR][1000 genomes]
rs10233033	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10243772	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10243883	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256389	0.92[EUR][1000 genomes]
rs10272085	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10273632	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10953681	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10953686	1.00[CEU][hapmap]
rs10953687	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11760430	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11763541	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11764280	1.00[CEU][hapmap]
rs11768142	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11768372	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11768397	0.92[EUR][1000 genomes]
rs11770561	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11770565	0.85[EUR][1000 genomes]
rs11772790	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773249	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12530747	1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs12530771	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12530773	0.94[EUR][1000 genomes]
rs12530792	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12531353	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12531547	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12531558	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12533182	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12533194	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12533269	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12533873	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12534669	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12534800	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12535118	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12536628	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12536952	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12536959	1.00[CEU][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs12537842	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12538564	0.87[CEU][hapmap];1.00[CHD][hapmap]
rs12538687	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12538706	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12539657	0.98[EUR][1000 genomes]
rs12540478	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12540572	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12540597	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13240011	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1496765	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17441871	1.00[CEU][hapmap]
rs17442142	1.00[CEU][hapmap]
rs28502814	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28565439	0.94[EUR][1000 genomes]
rs28650857	0.98[EUR][1000 genomes]
rs35895217	0.92[EUR][1000 genomes]
rs4370470	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs55669940	0.96[EUR][1000 genomes]
rs55827541	0.96[EUR][1000 genomes]
rs55984124	0.92[EUR][1000 genomes]
rs56161537	0.96[EUR][1000 genomes]
rs56165236	0.85[EUR][1000 genomes]
rs56277847	0.92[EUR][1000 genomes]
rs66495951	0.92[EUR][1000 genomes]
rs6946747	0.96[EUR][1000 genomes]
rs6953739	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73135509	0.92[EUR][1000 genomes]
rs73135518	0.92[EUR][1000 genomes]
rs73135526	0.92[EUR][1000 genomes]
rs73145170	0.83[EUR][1000 genomes]
rs73145178	0.83[EUR][1000 genomes]
rs73145192	0.83[EUR][1000 genomes]
rs73145196	0.83[EUR][1000 genomes]
rs73145199	0.83[EUR][1000 genomes]
rs73147023	0.85[EUR][1000 genomes]
rs73147024	0.83[EUR][1000 genomes]
rs73147031	0.85[EUR][1000 genomes]
rs73147034	0.85[EUR][1000 genomes]
rs73147035	0.85[EUR][1000 genomes]
rs73147039	0.85[EUR][1000 genomes]
rs73147058	0.85[EUR][1000 genomes]
rs73149076	0.85[EUR][1000 genomes]
rs73149082	0.85[EUR][1000 genomes]
rs73149083	0.85[EUR][1000 genomes]
rs73149085	0.85[EUR][1000 genomes]
rs73149086	0.85[EUR][1000 genomes]
rs73149096	0.92[EUR][1000 genomes]
rs73150705	0.92[EUR][1000 genomes]
rs73150708	0.92[EUR][1000 genomes]
rs73150717	0.92[EUR][1000 genomes]
rs73150732	0.92[EUR][1000 genomes]
rs73150760	0.94[EUR][1000 genomes]
rs73150764	0.98[EUR][1000 genomes]
rs73150767	0.98[EUR][1000 genomes]
rs73150783	0.98[EUR][1000 genomes]
rs73150785	0.98[EUR][1000 genomes]
rs73150787	0.98[EUR][1000 genomes]
rs73150791	0.98[EUR][1000 genomes]
rs73150794	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152411	0.98[EUR][1000 genomes]
rs73152421	0.98[EUR][1000 genomes]
rs73152427	0.98[EUR][1000 genomes]
rs73152434	0.98[EUR][1000 genomes]
rs73152443	0.98[EUR][1000 genomes]
rs73152448	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1801917	chr7:78353677-78354688	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78346800-78361400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:78353200-78354000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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