Variant report

Variant	rs11764280
Chromosome Location	chr7:78310922-78310923
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10228359	0.84[EUR][1000 genomes]
rs10228963	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10229438	1.00[CEU][hapmap]
rs10229458	1.00[CEU][hapmap]
rs10230190	1.00[CEU][hapmap]
rs10230478	1.00[CEU][hapmap]
rs10230501	1.00[CEU][hapmap]
rs10231465	0.84[EUR][1000 genomes]
rs10243772	1.00[CEU][hapmap]
rs10243883	1.00[CEU][hapmap]
rs10256389	0.80[EUR][1000 genomes]
rs10272085	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10273632	1.00[CEU][hapmap]
rs10953681	1.00[CEU][hapmap]
rs10953686	1.00[CEU][hapmap]
rs10953687	1.00[CEU][hapmap]
rs11760430	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11763541	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11768142	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11768372	1.00[CEU][hapmap]
rs11770561	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11770565	0.87[EUR][1000 genomes]
rs11773249	1.00[CEU][hapmap]
rs12530747	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12530771	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12530792	1.00[CEU][hapmap]
rs12531353	1.00[CEU][hapmap]
rs12531547	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12531558	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12533182	1.00[CEU][hapmap]
rs12533194	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12533269	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12533873	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12534669	1.00[CEU][hapmap]
rs12534800	1.00[CEU][hapmap]
rs12536628	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12536952	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12536959	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12537842	1.00[CEU][hapmap]
rs12538564	0.87[CEU][hapmap]
rs12538687	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12538706	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12540478	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12540572	1.00[CEU][hapmap]
rs12540597	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12669245	0.81[EUR][1000 genomes]
rs13240011	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1496765	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17441871	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17442142	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs35895217	0.80[EUR][1000 genomes]
rs4370470	1.00[CEU][hapmap]
rs55984124	0.80[EUR][1000 genomes]
rs56165236	0.87[EUR][1000 genomes]
rs56277847	0.80[EUR][1000 genomes]
rs6953739	1.00[CEU][hapmap]
rs73145155	0.90[EUR][1000 genomes]
rs73145158	0.90[EUR][1000 genomes]
rs73145161	0.90[EUR][1000 genomes]
rs73145166	0.92[EUR][1000 genomes]
rs73145170	0.89[EUR][1000 genomes]
rs73145178	0.89[EUR][1000 genomes]
rs73145192	0.89[EUR][1000 genomes]
rs73145196	0.89[EUR][1000 genomes]
rs73145199	0.89[EUR][1000 genomes]
rs73147023	0.87[EUR][1000 genomes]
rs73147024	0.85[EUR][1000 genomes]
rs73147031	0.87[EUR][1000 genomes]
rs73147034	0.87[EUR][1000 genomes]
rs73147035	0.87[EUR][1000 genomes]
rs73147039	0.87[EUR][1000 genomes]
rs73147058	0.87[EUR][1000 genomes]
rs73149076	0.87[EUR][1000 genomes]
rs73149082	0.87[EUR][1000 genomes]
rs73149083	0.87[EUR][1000 genomes]
rs73149085	0.87[EUR][1000 genomes]
rs73149086	0.87[EUR][1000 genomes]
rs73149096	0.80[EUR][1000 genomes]
rs73150705	0.80[EUR][1000 genomes]
rs73150708	0.80[EUR][1000 genomes]
rs73150717	0.80[EUR][1000 genomes]
rs73150732	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv888509	chr7:78307944-78327299	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78301800-78321600	Weak transcription	Fetal Brain Female	brain
2	chr7:78304800-78313000	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:78305400-78312400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78305400-78312800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:78307400-78312600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:78307400-78313600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:78307800-78312800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:78309200-78311200	Weak transcription	Pancreas	Pancrea
9	chr7:78310000-78313000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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