Variant report

Variant	rs73145166
Chromosome Location	chr7:78312143-78312144
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78311438..78314304-chr7:78317358..78319048,2	K562	blood:
2	chr7:78306457..78309049-chr7:78311061..78313913,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10228359	0.91[EUR][1000 genomes]
rs10228963	0.91[EUR][1000 genomes]
rs10231465	0.91[EUR][1000 genomes]
rs10256389	0.87[EUR][1000 genomes]
rs10272085	0.91[EUR][1000 genomes]
rs10485909	1.00[AFR][1000 genomes]
rs11760430	0.94[EUR][1000 genomes]
rs11760911	1.00[AFR][1000 genomes]
rs11763541	0.94[EUR][1000 genomes]
rs11764280	0.92[EUR][1000 genomes]
rs11768142	0.87[EUR][1000 genomes]
rs11770561	0.94[EUR][1000 genomes]
rs11770565	0.94[EUR][1000 genomes]
rs11770702	1.00[AFR][1000 genomes]
rs11773249	0.81[EUR][1000 genomes]
rs12530747	0.94[EUR][1000 genomes]
rs12530771	0.94[EUR][1000 genomes]
rs12530792	0.81[EUR][1000 genomes]
rs12531353	0.81[EUR][1000 genomes]
rs12531547	0.94[EUR][1000 genomes]
rs12531558	0.94[EUR][1000 genomes]
rs12533182	0.81[EUR][1000 genomes]
rs12533194	0.94[EUR][1000 genomes]
rs12533269	0.94[EUR][1000 genomes]
rs12533873	0.94[EUR][1000 genomes]
rs12535118	0.85[EUR][1000 genomes]
rs12536628	0.87[EUR][1000 genomes]
rs12536952	0.94[EUR][1000 genomes]
rs12536959	0.94[EUR][1000 genomes]
rs12537842	0.81[EUR][1000 genomes]
rs12538687	0.94[EUR][1000 genomes]
rs12538706	0.94[EUR][1000 genomes]
rs12539657	0.81[EUR][1000 genomes]
rs12540478	0.94[EUR][1000 genomes]
rs12540572	0.81[EUR][1000 genomes]
rs12540597	0.94[EUR][1000 genomes]
rs12669245	0.87[EUR][1000 genomes]
rs13240011	0.87[EUR][1000 genomes]
rs1496765	0.91[EUR][1000 genomes]
rs17151130	1.00[AFR][1000 genomes]
rs17151134	1.00[AFR][1000 genomes]
rs17151138	1.00[AFR][1000 genomes]
rs17151148	1.00[AFR][1000 genomes]
rs17151159	1.00[AFR][1000 genomes]
rs17151184	1.00[AFR][1000 genomes]
rs17151281	1.00[AFR][1000 genomes]
rs17441871	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17442142	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1859934	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28650857	0.81[EUR][1000 genomes]
rs323132	1.00[AFR][1000 genomes]
rs323141	1.00[AFR][1000 genomes]
rs323142	1.00[AFR][1000 genomes]
rs323143	1.00[AFR][1000 genomes]
rs35895217	0.87[EUR][1000 genomes]
rs452398	1.00[AFR][1000 genomes]
rs55984124	0.87[EUR][1000 genomes]
rs56165236	0.94[EUR][1000 genomes]
rs56277847	0.87[EUR][1000 genomes]
rs73145155	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73145158	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73145161	0.83[EUR][1000 genomes]
rs73145170	0.96[EUR][1000 genomes]
rs73145178	0.96[EUR][1000 genomes]
rs73145192	0.96[EUR][1000 genomes]
rs73145196	0.96[EUR][1000 genomes]
rs73145199	0.96[EUR][1000 genomes]
rs73147023	0.94[EUR][1000 genomes]
rs73147024	0.92[EUR][1000 genomes]
rs73147031	0.94[EUR][1000 genomes]
rs73147034	0.94[EUR][1000 genomes]
rs73147035	0.94[EUR][1000 genomes]
rs73147039	0.94[EUR][1000 genomes]
rs73147058	0.94[EUR][1000 genomes]
rs73149076	0.94[EUR][1000 genomes]
rs73149082	0.94[EUR][1000 genomes]
rs73149083	0.94[EUR][1000 genomes]
rs73149085	0.94[EUR][1000 genomes]
rs73149086	0.94[EUR][1000 genomes]
rs73149096	0.87[EUR][1000 genomes]
rs73150705	0.87[EUR][1000 genomes]
rs73150708	0.87[EUR][1000 genomes]
rs73150717	0.87[EUR][1000 genomes]
rs73150732	0.87[EUR][1000 genomes]
rs73150760	0.85[EUR][1000 genomes]
rs73150764	0.81[EUR][1000 genomes]
rs73150767	0.81[EUR][1000 genomes]
rs73150783	0.81[EUR][1000 genomes]
rs73150785	0.81[EUR][1000 genomes]
rs73150787	0.81[EUR][1000 genomes]
rs73150791	0.81[EUR][1000 genomes]
rs73152411	0.81[EUR][1000 genomes]
rs73152421	0.81[EUR][1000 genomes]
rs73152427	0.81[EUR][1000 genomes]
rs73152434	0.81[EUR][1000 genomes]
rs73152443	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv888509	chr7:78307944-78327299	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78301800-78321600	Weak transcription	Fetal Brain Female	brain
2	chr7:78304800-78313000	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:78305400-78312400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78305400-78312800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:78307400-78312600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:78307400-78313600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:78307800-78312800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:78310000-78313000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links