Variant report

Variant	rs12669245
Chromosome Location	chr7:78330256-78330257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10228359	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10228963	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10231465	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10239807	0.92[AFR][1000 genomes]
rs10245825	0.95[AFR][1000 genomes]
rs10256389	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10272085	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11760430	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11763541	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11764280	0.81[EUR][1000 genomes]
rs11768142	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11770561	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11770565	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11773249	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12530747	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12530771	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12530773	0.84[AMR][1000 genomes]
rs12530792	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12531353	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12531547	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12531558	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12533182	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12533194	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12533269	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12533873	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12535118	0.84[EUR][1000 genomes]
rs12536628	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12536952	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12536959	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12537842	0.80[EUR][1000 genomes]
rs12538687	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12538706	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12539657	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12540478	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12540572	0.80[EUR][1000 genomes]
rs12540597	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12667769	0.92[AFR][1000 genomes]
rs12669955	0.92[AFR][1000 genomes]
rs13240011	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1496765	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1496766	0.92[AFR][1000 genomes]
rs28650857	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35895217	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55984124	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56165236	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56277847	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73145166	0.87[EUR][1000 genomes]
rs73145170	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73145178	0.91[EUR][1000 genomes]
rs73145192	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73145196	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73145199	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73147023	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147024	0.91[EUR][1000 genomes]
rs73147031	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147034	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147035	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147039	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147058	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73149076	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73149082	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73149083	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73149085	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73149086	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73149096	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73150705	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73150708	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73150717	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73150732	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73150760	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73150764	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73150767	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73150783	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73150785	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73150787	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73150791	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73152411	0.80[EUR][1000 genomes]
rs73152421	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73152427	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73152434	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73152443	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78313800-78334200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78327800-78341200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:78328200-78336600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:78329600-78331000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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