Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485909	1.00[AFR][1000 genomes]
rs11760911	1.00[AFR][1000 genomes]
rs11764280	0.90[EUR][1000 genomes]
rs11770702	1.00[AFR][1000 genomes]
rs1496774	0.93[ASN][1000 genomes]
rs17151130	1.00[AFR][1000 genomes]
rs17151134	1.00[AFR][1000 genomes]
rs17151138	1.00[AFR][1000 genomes]
rs17151148	1.00[AFR][1000 genomes]
rs17151159	1.00[AFR][1000 genomes]
rs17151184	1.00[AFR][1000 genomes]
rs17151281	1.00[AFR][1000 genomes]
rs17441871	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17442142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859934	1.00[AFR][1000 genomes]
rs323132	1.00[AFR][1000 genomes]
rs323141	1.00[AFR][1000 genomes]
rs323142	1.00[AFR][1000 genomes]
rs323143	1.00[AFR][1000 genomes]
rs452398	1.00[AFR][1000 genomes]
rs73145158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145161	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145166	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78301000-78305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78301600-78304800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:78301800-78305000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78301800-78307000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:78301800-78321600	Weak transcription	Fetal Brain Female	brain

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