Variant report

Variant	rs12534800
Chromosome Location	chr7:78388690-78388691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10228963	1.00[CEU][hapmap]
rs10229438	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10229458	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10229518	0.81[AFR][1000 genomes]
rs10230190	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10230478	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10230501	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10233033	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10243772	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10243883	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10244492	0.81[AFR][1000 genomes]
rs10256389	0.87[EUR][1000 genomes]
rs10267590	0.81[AFR][1000 genomes]
rs10272085	1.00[CEU][hapmap]
rs10273632	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10953681	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10953686	1.00[CEU][hapmap]
rs10953687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760430	1.00[CEU][hapmap]
rs11763541	1.00[CEU][hapmap]
rs11764280	1.00[CEU][hapmap]
rs11768142	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11768372	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11768397	0.98[EUR][1000 genomes]
rs11770561	1.00[CEU][hapmap]
rs11772790	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11773249	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12113058	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12530747	1.00[CEU][hapmap]
rs12530771	1.00[CEU][hapmap]
rs12530773	0.88[EUR][1000 genomes]
rs12530792	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12531353	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12531547	1.00[CEU][hapmap]
rs12531558	1.00[CEU][hapmap]
rs12533182	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12533194	1.00[CEU][hapmap]
rs12533269	1.00[CEU][hapmap]
rs12533873	1.00[CEU][hapmap]
rs12534669	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12535118	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12536030	1.00[ASN][1000 genomes]
rs12536628	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12536952	1.00[CEU][hapmap]
rs12536959	1.00[CEU][hapmap]
rs12536979	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12537842	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12538687	1.00[CEU][hapmap]
rs12538706	1.00[CEU][hapmap]
rs12539657	0.92[EUR][1000 genomes]
rs12540478	1.00[CEU][hapmap]
rs12540572	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12540597	1.00[CEU][hapmap]
rs13240011	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1496765	1.00[CEU][hapmap]
rs16886268	1.00[YRI][hapmap]
rs17441871	1.00[CEU][hapmap]
rs17442142	1.00[CEU][hapmap]
rs28502814	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28565439	0.89[EUR][1000 genomes]
rs28650857	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35895217	0.87[EUR][1000 genomes]
rs4370470	1.00[CEU][hapmap]
rs55669940	0.94[EUR][1000 genomes]
rs55827541	0.94[EUR][1000 genomes]
rs55984124	0.87[EUR][1000 genomes]
rs56161537	0.94[EUR][1000 genomes]
rs56277847	0.87[EUR][1000 genomes]
rs66495951	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6946747	0.94[EUR][1000 genomes]
rs6948028	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6953739	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73135509	0.98[EUR][1000 genomes]
rs73135518	0.98[EUR][1000 genomes]
rs73135526	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135549	1.00[ASN][1000 genomes]
rs73135595	1.00[ASN][1000 genomes]
rs73137205	1.00[ASN][1000 genomes]
rs73137211	1.00[ASN][1000 genomes]
rs73149096	0.87[EUR][1000 genomes]
rs73150705	0.87[EUR][1000 genomes]
rs73150708	0.87[EUR][1000 genomes]
rs73150717	0.87[EUR][1000 genomes]
rs73150732	0.87[EUR][1000 genomes]
rs73150760	0.89[EUR][1000 genomes]
rs73150764	0.92[EUR][1000 genomes]
rs73150767	0.92[EUR][1000 genomes]
rs73150783	0.92[EUR][1000 genomes]
rs73150785	0.92[EUR][1000 genomes]
rs73150787	0.92[EUR][1000 genomes]
rs73150791	0.92[EUR][1000 genomes]
rs73150794	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73152411	0.92[EUR][1000 genomes]
rs73152421	0.92[EUR][1000 genomes]
rs73152427	0.92[EUR][1000 genomes]
rs73152434	0.92[EUR][1000 genomes]
rs73152443	0.92[EUR][1000 genomes]
rs73152448	0.94[EUR][1000 genomes]
rs73365873	1.00[ASN][1000 genomes]
rs7807216	0.81[AFR][1000 genomes]
rs9656182	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78372400-78391600	Weak transcription	Pancreas	Pancrea
2	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
3	chr7:78381200-78393200	Weak transcription	Fetal Heart	heart
4	chr7:78381200-78393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:78386200-78397600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:78388400-78395200	Weak transcription	Brain Cingulate Gyrus	brain

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