Variant report

Variant	rs10229879
Chromosome Location	chr7:141048903-141048904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10245819	0.82[EUR][1000 genomes]
rs10253128	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10274567	0.88[EUR][1000 genomes]
rs1859575	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2107944	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55728485	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6946712	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6964699	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6965337	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6978289	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7779102	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831160	chr7:141009011-141188046	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3428582	chr7:141013551-141064197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34135	chr7:141047454-141492898	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:141037200-141049200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:141037200-141054200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:141039200-141050800	Weak transcription	Right Ventricle	heart
4	chr7:141041200-141053600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:141041600-141049200	Weak transcription	Brain Germinal Matrix	brain
6	chr7:141047600-141049200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:141047600-141054200	Weak transcription	Right Atrium	heart
8	chr7:141047600-141054800	Weak transcription	Left Ventricle	heart
9	chr7:141048800-141049600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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