Variant report

Variant	rs10253128
Chromosome Location	chr7:141059538-141059539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10229879	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10245819	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10274567	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1541419	0.82[AMR][1000 genomes]
rs1859575	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2107944	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55728485	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55996608	0.89[ASN][1000 genomes]
rs6946712	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6964699	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6965337	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6978289	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7779102	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831160	chr7:141009011-141188046	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3428582	chr7:141013551-141064197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34135	chr7:141047454-141492898	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:141053000-141059600	Enhancers	Fetal Lung	lung
2	chr7:141054400-141062000	Weak transcription	Brain Substantia Nigra	brain
3	chr7:141054800-141061200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:141055000-141060200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:141055000-141062200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:141055200-141061600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:141055200-141062400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:141055200-141065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:141055400-141060200	Weak transcription	Left Ventricle	heart
10	chr7:141055400-141060400	Weak transcription	Fetal Brain Female	brain
11	chr7:141055400-141061200	Weak transcription	HMEC	breast
12	chr7:141055400-141062400	Weak transcription	Right Atrium	heart
13	chr7:141055400-141062600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:141055400-141065800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:141055400-141065800	Weak transcription	Brain Germinal Matrix	brain
16	chr7:141055600-141060000	Weak transcription	HSMMtube	muscle
17	chr7:141055600-141060200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:141055600-141061600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:141055600-141061800	Weak transcription	NH-A	brain
20	chr7:141055600-141062600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:141055800-141060800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:141055800-141062600	Weak transcription	Psoas Muscle	Psoas
23	chr7:141056400-141060000	Weak transcription	HUVEC	blood vessel
24	chr7:141056600-141060800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:141056800-141060200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:141056800-141061400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:141056800-141061800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:141056800-141062000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:141057000-141060400	Weak transcription	HSMM	muscle
30	chr7:141058200-141062000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr7:141058600-141059600	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr7:141059200-141060200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:141059200-141061400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:141059400-141061400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:141059400-141067800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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