Variant report

Variant	rs55728485
Chromosome Location	chr7:141054272-141054273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10229879	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10245819	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10253128	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10274567	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859575	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2107944	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55996608	0.89[ASN][1000 genomes]
rs56216313	0.81[ASN][1000 genomes]
rs6946712	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6964699	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6965337	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6978289	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7779102	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831160	chr7:141009011-141188046	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3428582	chr7:141013551-141064197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34135	chr7:141047454-141492898	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:141047600-141054800	Weak transcription	Left Ventricle	heart
2	chr7:141049800-141054400	Weak transcription	Brain Germinal Matrix	brain
3	chr7:141049800-141054800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:141051400-141055000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:141052800-141055800	Enhancers	Brain Cingulate Gyrus	brain
6	chr7:141053000-141055400	Enhancers	Brain Anterior Caudate	brain
7	chr7:141053000-141055400	Enhancers	Brain Hippocampus Middle	brain
8	chr7:141053000-141059600	Enhancers	Fetal Lung	lung
9	chr7:141053200-141054400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:141053600-141055200	Enhancers	Fetal Stomach	stomach
11	chr7:141053600-141055400	Enhancers	Brain Angular Gyrus	brain
12	chr7:141053600-141055600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:141053600-141055600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:141053600-141055600	Enhancers	Osteobl	bone
15	chr7:141053800-141054400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:141053800-141054800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:141053800-141054800	Enhancers	Right Ventricle	heart
18	chr7:141053800-141055600	Enhancers	HSMMtube	muscle
19	chr7:141053800-141055600	Enhancers	NH-A	brain
20	chr7:141053800-141055800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:141053800-141056400	Enhancers	HUVEC	blood vessel
22	chr7:141053800-141056600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:141054000-141054800	Enhancers	Duodenum Mucosa	Duodenum
24	chr7:141054000-141055400	Enhancers	HMEC	breast
25	chr7:141054000-141055600	Enhancers	HSMM	muscle
26	chr7:141054200-141054400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr7:141054200-141054400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:141054200-141054400	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr7:141054200-141054400	Enhancers	Brain Substantia Nigra	brain
30	chr7:141054200-141054600	Weak transcription	Psoas Muscle	Psoas
31	chr7:141054200-141055000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:141054200-141055000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr7:141054200-141055200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:141054200-141055200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:141054200-141055200	Enhancers	Fetal Brain Male	brain
36	chr7:141054200-141055400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:141054200-141055400	Enhancers	Right Atrium	heart
38	chr7:141054200-141056800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:141054200-141056800	Enhancers	Skeletal Muscle Female	skeletal muscle

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