Variant report

Variant	rs10230144
Chromosome Location	chr7:39113120-39113121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39109858..39114276-chr7:39116660..39120717,5	K562	blood:
2	chr7:39112762..39114276-chr7:39117941..39120717,2	K562	blood:
3	chr7:39103596..39105131-chr7:39111658..39114423,2	K562	blood:
4	chr20:13589311..13590026-chr7:39112784..39113357,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10085668	1.00[CHB][hapmap]
rs10234944	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251322	1.00[CHB][hapmap]
rs10265024	1.00[CHB][hapmap]
rs10479859	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702821	1.00[CHB][hapmap]
rs859530	1.00[CHB][hapmap]
rs859548	1.00[CHB][hapmap]
rs9655399	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986980	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39109600-39113800	Weak transcription	Placenta	Placenta
2	chr7:39111800-39113200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:39111800-39113600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:39112000-39113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:39112000-39113800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:39112200-39113600	Enhancers	Brain Germinal Matrix	brain
7	chr7:39112200-39114400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:39112400-39113400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:39112400-39113400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:39112400-39113600	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:39112400-39113600	Enhancers	Fetal Lung	lung
12	chr7:39112600-39113400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:39112600-39113600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:39112600-39113600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:39112600-39113600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:39113000-39113200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:39113000-39113200	Active TSS	Brain Hippocampus Middle	brain
18	chr7:39113000-39113200	Enhancers	Fetal Brain Male	brain
19	chr7:39113000-39113400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr7:39113000-39113400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:39113000-39113400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:39113000-39113400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:39113000-39113400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:39113000-39113400	Active TSS	Aorta	Aorta
25	chr7:39113000-39113400	Active TSS	Stomach Smooth Muscle	stomach
26	chr7:39113000-39113800	Enhancers	Cortex derived primary cultured neurospheres	brain

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