Variant report

Variant	rs9986980
Chromosome Location	chr7:39059666-39059667
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10085668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10085866	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230144	1.00[CHB][hapmap]
rs10230554	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234944	1.00[CHB][hapmap]
rs10249708	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251322	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs10251577	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs702821	1.00[CHB][hapmap]
rs73697925	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859530	1.00[CHB][hapmap]
rs859548	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39054200-39062000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:39058000-39062000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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