Variant report

Variant	rs10251322
Chromosome Location	chr7:39053399-39053400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10085668	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10230144	1.00[CHB][hapmap]
rs10234944	1.00[CHB][hapmap]
rs10251577	0.81[EUR][1000 genomes]
rs10265024	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs702821	1.00[CHB][hapmap]
rs859530	1.00[CHB][hapmap]
rs859548	1.00[CHB][hapmap]
rs9986980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39052600-39053800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr7:39052600-39054200	Active TSS	H1 Cell Line	embryonic stem cell
3	chr7:39052600-39054400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:39052600-39054400	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr7:39052800-39053400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:39052800-39054200	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr7:39052800-39054200	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr7:39052800-39054200	Active TSS	K562	blood
9	chr7:39053000-39053600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:39053000-39054200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr7:39053000-39054200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr7:39053200-39053600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr7:39053200-39053600	Active TSS	Placenta	Placenta
14	chr7:39053200-39053800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:39053200-39053800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr7:39053200-39054600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:39053200-39056200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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