Variant report

Variant	rs10231136
Chromosome Location	chr7:128163094-128163095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128155495..128157249-chr7:128162129..128164004,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10223975	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227608	0.81[EUR][1000 genomes]
rs10233059	0.80[AFR][1000 genomes]
rs10250369	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10253131	0.82[AFR][1000 genomes]
rs10261037	0.81[AFR][1000 genomes]
rs10269844	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10272840	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11766319	0.85[EUR][1000 genomes]
rs11767993	0.83[EUR][1000 genomes]
rs11770604	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11771884	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11772734	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530672	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12532513	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12537208	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12540658	1.00[ASN][1000 genomes]
rs13224451	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224784	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13226592	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13233642	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13246302	0.81[EUR][1000 genomes]
rs13247746	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496126	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28521260	0.81[EUR][1000 genomes]
rs34125589	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34490491	0.82[AFR][1000 genomes]
rs34942906	0.81[AFR][1000 genomes]
rs4338038	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953818	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57890423	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60029447	0.86[AFR][1000 genomes]
rs60654313	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467181	0.87[EUR][1000 genomes]
rs6467184	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6958343	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6963982	0.83[EUR][1000 genomes]
rs6969343	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71546775	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71546785	0.86[AFR][1000 genomes]
rs71546786	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7776915	0.80[AFR][1000 genomes]
rs7777625	0.81[EUR][1000 genomes]
rs7786772	0.83[EUR][1000 genomes]
rs7790839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798172	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7798776	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7801678	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690225	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10231136	METTL2B	cis	Skin Sun Exposed Lower leg	GTEx
rs10231136	RP11-274B21.10	cis	Esophagus Mucosa	GTEx
rs10231136	METTL2B	cis	Artery Tibial	GTEx
rs10231136	CICP14	cis	Muscle Skeletal	GTEx
rs10231136	RP11-274B21.10	cis	Esophagus Muscularis	GTEx
rs10231136	RP11-274B21.10	cis	Thyroid	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:128153200-128163200	Weak transcription	K562	blood
4	chr7:128160600-128163200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:128162800-128163800	Enhancers	Duodenum Mucosa	Duodenum
6	chr7:128162800-128164000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr7:128162800-128164000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:128162800-128164400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:128162800-128164400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:128162800-128164400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:128162800-128164400	Enhancers	Fetal Intestine Small	intestine
12	chr7:128162800-128164400	Enhancers	Fetal Muscle Trunk	muscle
13	chr7:128162800-128164400	Enhancers	Pancreas	Pancrea
14	chr7:128162800-128164600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:128162800-128164800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr7:128162800-128165000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr7:128163000-128164400	Enhancers	Fetal Heart	heart
18	chr7:128163000-128166400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links