Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10223975	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10231136	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10272840	0.95[ASN][1000 genomes]
rs11766319	0.83[AFR][1000 genomes]
rs11767993	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11770604	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11772734	0.95[ASN][1000 genomes]
rs12530672	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532513	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12540658	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13224451	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13224784	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13226592	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13247746	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34742251	0.82[EUR][1000 genomes]
rs4338038	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs57890423	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60654313	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6467181	0.83[AFR][1000 genomes]
rs71546775	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7790839	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7798776	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7801678	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs13233642	RP11-274B21.10	cis	Thyroid	GTEx
rs13233642	CICP14	cis	Nerve Tibial	GTEx
rs13233642	METTL2B	cis	Skin Sun Exposed Lower leg	GTEx
rs13233642	RP11-274B21.10	cis	Skin Sun Exposed Lower leg	GTEx
rs13233642	CICP14	cis	Thyroid	GTEx
rs13233642	RP11-274B21.10	cis	Esophagus Muscularis	GTEx
rs13233642	RP11-274B21.10	cis	Esophagus Mucosa	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:128142200-128152600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:128143600-128155400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:128152000-128153000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:128152000-128153200	Enhancers	K562	blood
11	chr7:128152200-128152600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr7:128152200-128152800	Active TSS	Monocytes-CD14+_RO01746	blood

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