Variant report

Variant	rs13247746
Chromosome Location	chr7:128154273-128154274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10223975	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227608	0.81[EUR][1000 genomes]
rs10231136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241185	0.82[AFR][1000 genomes]
rs10250369	0.80[EUR][1000 genomes]
rs10259359	0.87[AFR][1000 genomes]
rs10269844	0.83[EUR][1000 genomes]
rs10272840	1.00[ASN][1000 genomes]
rs11766319	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11767993	0.83[EUR][1000 genomes]
rs11770604	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11771884	0.85[EUR][1000 genomes]
rs11772734	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530672	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12532513	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12537208	0.80[EUR][1000 genomes]
rs12540658	1.00[ASN][1000 genomes]
rs13224451	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224613	0.81[AFR][1000 genomes]
rs13224784	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13226592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13233642	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13246302	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28496126	0.81[EUR][1000 genomes]
rs28521260	0.81[EUR][1000 genomes]
rs34125589	0.84[EUR][1000 genomes]
rs4338038	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953818	0.81[EUR][1000 genomes]
rs57049631	0.87[AFR][1000 genomes]
rs57890423	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60654313	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467181	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6467184	0.81[EUR][1000 genomes]
rs6958343	0.83[EUR][1000 genomes]
rs6963982	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6967393	0.81[AFR][1000 genomes]
rs6969343	0.83[EUR][1000 genomes]
rs71546775	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71546786	0.81[EUR][1000 genomes]
rs7777625	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7786772	0.83[EUR][1000 genomes]
rs7790839	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798172	0.81[EUR][1000 genomes]
rs7798776	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7801678	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690225	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs13247746	RP11-274B21.10	cis	Esophagus Muscularis	GTEx
rs13247746	RP11-274B21.10	cis	Thyroid	GTEx
rs13247746	CICP14	cis	Thyroid	GTEx
rs13247746	RP11-274B21.10	cis	Skin Sun Exposed Lower leg	GTEx
rs13247746	METTL2B	cis	Skin Sun Exposed Lower leg	GTEx
rs13247746	CICP14	cis	Nerve Tibial	GTEx
rs13247746	RP11-274B21.10	cis	Esophagus Mucosa	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:128143600-128155400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:128152600-128154800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:128153000-128154600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:128153200-128163200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links