Variant report

Variant	rs1023255
Chromosome Location	chr1:79052962-79052963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11162516	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1265663	0.88[YRI][hapmap]
rs1333979	0.88[AFR][1000 genomes]
rs1360701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2352206	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs559854	0.80[AFR][1000 genomes]
rs663485	0.80[AFR][1000 genomes]
rs6673753	1.00[AMR][1000 genomes]
rs928541	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1577	chr1:79013311-79058575	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79051400-79053600	Enhancers	HMEC	breast
2	chr1:79051600-79053200	Enhancers	HSMMtube	muscle
3	chr1:79051600-79053600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:79051600-79053600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:79051600-79053600	Enhancers	HSMM	muscle
6	chr1:79052000-79053600	Enhancers	NHEK	skin
7	chr1:79052200-79053200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:79052200-79053200	Enhancers	NHDF-Ad	bronchial
9	chr1:79052200-79053400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:79052200-79053600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:79052800-79057200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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