Variant report

Variant	rs663485
Chromosome Location	chr1:79011202-79011203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1023255	0.80[AFR][1000 genomes]
rs11162516	0.85[AFR][1000 genomes]
rs1265657	1.00[AMR][1000 genomes]
rs1265663	1.00[AMR][1000 genomes]
rs1322930	1.00[AMR][1000 genomes]
rs1322932	1.00[AMR][1000 genomes]
rs1322936	1.00[AMR][1000 genomes]
rs1333979	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1360701	0.80[AFR][1000 genomes]
rs1412846	1.00[AMR][1000 genomes]
rs17101751	1.00[AMR][1000 genomes]
rs17101783	1.00[AMR][1000 genomes]
rs2352206	0.80[AFR][1000 genomes]
rs494131	1.00[AMR][1000 genomes]
rs559854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564407	1.00[AMR][1000 genomes]
rs569846	1.00[AMR][1000 genomes]
rs581338	1.00[AMR][1000 genomes]
rs599583	1.00[AMR][1000 genomes]
rs601137	1.00[AMR][1000 genomes]
rs602865	1.00[AMR][1000 genomes]
rs640003	1.00[AMR][1000 genomes]
rs645528	1.00[AMR][1000 genomes]
rs676130	1.00[AMR][1000 genomes]
rs689110	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7516567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv3375099	chr1:79010980-79033337	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79004200-79012400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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