Variant report

Variant	rs1333979
Chromosome Location	chr1:79052373-79052374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1023255	0.88[AFR][1000 genomes]
rs11162516	0.82[AFR][1000 genomes]
rs1265657	1.00[AMR][1000 genomes]
rs1265663	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs1322930	1.00[AMR][1000 genomes]
rs1322932	1.00[AMR][1000 genomes]
rs1322936	1.00[AMR][1000 genomes]
rs1360701	0.88[AFR][1000 genomes]
rs1412846	1.00[AMR][1000 genomes]
rs17101751	1.00[AMR][1000 genomes]
rs17101783	1.00[AMR][1000 genomes]
rs494131	1.00[AMR][1000 genomes]
rs559854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564407	1.00[AMR][1000 genomes]
rs569846	1.00[AMR][1000 genomes]
rs581338	1.00[AMR][1000 genomes]
rs599583	1.00[AMR][1000 genomes]
rs601137	1.00[AMR][1000 genomes]
rs602865	1.00[AMR][1000 genomes]
rs640003	1.00[AMR][1000 genomes]
rs645528	1.00[AMR][1000 genomes]
rs663485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs676130	1.00[AMR][1000 genomes]
rs689110	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7516567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1577	chr1:79013311-79058575	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79051400-79053600	Enhancers	HMEC	breast
2	chr1:79051600-79053200	Enhancers	HSMMtube	muscle
3	chr1:79051600-79053600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:79051600-79053600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:79051600-79053600	Enhancers	HSMM	muscle
6	chr1:79051800-79052400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:79052000-79052600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:79052000-79053600	Enhancers	NHEK	skin
9	chr1:79052200-79052400	Bivalent Enhancer	Aorta	Aorta
10	chr1:79052200-79052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:79052200-79053200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:79052200-79053200	Enhancers	NHDF-Ad	bronchial
13	chr1:79052200-79053400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:79052200-79053600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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