Variant report

Variant	rs10235801
Chromosome Location	chr7:25604598-25604599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:25596711..25599628-chr7:25603188..25605911,2	K562	blood:
2	chr7:25429055..25432240-chr7:25604579..25606349,45	MCF-7	breast:
3	chr7:25431016..25431601-chr7:25604360..25604977,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10240053	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12531920	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12534642	0.96[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12700650	0.81[ASN][1000 genomes]
rs169642	0.86[ASN][1000 genomes]
rs208544	0.86[ASN][1000 genomes]
rs208545	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs208546	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs208549	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs208555	0.86[ASN][1000 genomes]
rs208557	0.86[ASN][1000 genomes]
rs2134480	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2158059	0.81[ASN][1000 genomes]
rs2188860	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2521745	0.81[ASN][1000 genomes]
rs2521748	0.95[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2521750	0.81[ASN][1000 genomes]
rs2521751	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2653941	0.81[CHB][hapmap]
rs2813890	0.81[CHB][hapmap]
rs2813891	0.94[ASN][1000 genomes]
rs2813894	0.96[ASN][1000 genomes]
rs2813895	0.88[ASN][1000 genomes]
rs28394819	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs739623	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs980358	0.81[CHB][hapmap]
rs980359	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv522815	chr7:25599858-25606120	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv523322	chr7:25601480-25606120	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25600800-25605200	Enhancers	Brain Germinal Matrix	brain
2	chr7:25603000-25604600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:25603600-25605200	Weak transcription	Fetal Brain Male	brain
4	chr7:25603800-25605000	Enhancers	Psoas Muscle	Psoas
5	chr7:25604000-25605200	Enhancers	Fetal Stomach	stomach
6	chr7:25604000-25605400	Enhancers	Fetal Brain Female	brain
7	chr7:25604000-25606000	Enhancers	Colon Smooth Muscle	Colon
8	chr7:25604000-25606200	Enhancers	Fetal Lung	lung
9	chr7:25604400-25604600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:25604400-25604600	Bivalent Enhancer	Brain Substantia Nigra	brain
11	chr7:25604400-25604600	Enhancers	Fetal Kidney	kidney
12	chr7:25604400-25605000	Enhancers	Fetal Muscle Leg	muscle
13	chr7:25604400-25605200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr7:25604400-25605400	Enhancers	Stomach Smooth Muscle	stomach
15	chr7:25604400-25605600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:25604400-25605600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:25604400-25605600	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:25604400-25605600	Enhancers	Skeletal Muscle Male	skeletal muscle

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