Variant report

Variant	rs2813895
Chromosome Location	chr7:25635529-25635530
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10235801	0.88[ASN][1000 genomes]
rs10240053	0.89[ASN][1000 genomes]
rs12531920	0.89[ASN][1000 genomes]
rs12534642	0.89[ASN][1000 genomes]
rs12700650	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs208545	0.89[ASN][1000 genomes]
rs208549	0.89[ASN][1000 genomes]
rs2134480	0.89[ASN][1000 genomes]
rs2188860	0.83[ASN][1000 genomes]
rs2521748	0.89[ASN][1000 genomes]
rs2521751	0.89[ASN][1000 genomes]
rs2813891	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2813894	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28394819	0.89[ASN][1000 genomes]
rs739623	0.89[ASN][1000 genomes]
rs757042	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	esv2753823	chr7:25626156-25655093	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25634200-25635800	Weak transcription	Fetal Intestine Small	intestine
2	chr7:25634400-25635600	Weak transcription	Fetal Intestine Large	intestine
3	chr7:25635000-25636200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:25635000-25638800	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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