Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25634954..25637088-chr7:25637299..25639062,2	MCF-7	breast:
2	chr7:25631774..25634150-chr7:25636240..25639148,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10235801	0.94[ASN][1000 genomes]
rs10240053	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12531920	0.86[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs12534642	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12700650	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs169642	0.83[ASN][1000 genomes]
rs208544	0.83[ASN][1000 genomes]
rs208545	0.95[ASN][1000 genomes]
rs208546	0.84[ASN][1000 genomes]
rs208549	0.95[ASN][1000 genomes]
rs208555	0.83[ASN][1000 genomes]
rs208557	0.83[ASN][1000 genomes]
rs2134480	0.95[ASN][1000 genomes]
rs2188860	0.89[ASN][1000 genomes]
rs2521748	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs2521751	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2813894	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2813895	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28394819	0.95[ASN][1000 genomes]
rs739623	0.95[ASN][1000 genomes]
rs757042	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	esv2753823	chr7:25626156-25655093	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25635000-25638800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:25636400-25640600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:25636400-25642200	Weak transcription	Fetal Intestine Small	intestine
4	chr7:25636400-25642600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:25636600-25642600	Weak transcription	Fetal Stomach	stomach
6	chr7:25637000-25638800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:25637200-25638000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:25637200-25638000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:25637400-25638400	Weak transcription	Pancreas	Pancrea
10	chr7:25637400-25638600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:25637400-25642800	Weak transcription	Aorta	Aorta
12	chr7:25637600-25638000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:25637600-25638000	Enhancers	Adipose Nuclei	Adipose
14	chr7:25637600-25638400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:25637600-25638400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:25637600-25638600	Enhancers	Small Intestine	intestine
17	chr7:25637600-25638800	Enhancers	Liver	Liver

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