Variant report

Variant	rs10235904
Chromosome Location	chr7:38645929-38645930
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10223974	0.82[YRI][hapmap]
rs10226563	0.84[AFR][1000 genomes]
rs10228249	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10228371	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10240067	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244201	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs13437692	0.88[LWK][hapmap]
rs17171422	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17171424	0.88[AFR][1000 genomes]
rs1864887	0.88[LWK][hapmap]
rs4723774	0.88[LWK][hapmap]
rs9986767	0.82[ASW][hapmap];0.94[LWK][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv606674	chr7:38619348-38655758	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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