Variant report
| Variant | rs17171424 |
|---|---|
| Chromosome Location | chr7:38677292-38677293 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:38676544..38679326-chr7:38679867..38682284,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10227883 | 0.80[AFR][1000 genomes] |
| rs10228249 | 0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs10228286 | 0.80[AFR][1000 genomes] |
| rs10228371 | 0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs10235904 | 1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap] |
| rs10240067 | 0.91[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs10244201 | 1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs10249504 | 0.80[AFR][1000 genomes] |
| rs10257029 | 0.80[AFR][1000 genomes] |
| rs10257782 | 0.80[AFR][1000 genomes] |
| rs10280201 | 0.81[AMR][1000 genomes] |
| rs10282173 | 0.80[AFR][1000 genomes] |
| rs13437692 | 0.84[LWK][hapmap];0.80[AFR][1000 genomes] |
| rs17171416 | 0.80[AFR][1000 genomes] |
| rs17171420 | 0.80[AFR][1000 genomes] |
| rs17171422 | 0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs17346292 | 0.80[AFR][1000 genomes] |
| rs1864887 | 0.84[LWK][hapmap];0.80[AFR][1000 genomes] |
| rs28504175 | 0.80[AFR][1000 genomes] |
| rs28510981 | 0.80[AFR][1000 genomes] |
| rs28578669 | 0.80[AFR][1000 genomes] |
| rs4723774 | 0.84[LWK][hapmap] |
| rs73692926 | 0.80[AFR][1000 genomes] |
| rs73692927 | 0.80[AFR][1000 genomes] |
| rs73692931 | 0.81[AMR][1000 genomes] |
| rs9986767 | 0.82[ASW][hapmap];0.90[LWK][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932229 | chr7:38248340-38727527 | Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:38671400-38677600 | Weak transcription | Right Atrium | heart |
