Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:38647481..38649540-chr7:38651687..38654931,3	K562	blood:
2	chr7:38652231..38655268-chr7:38661915..38665252,3	K562	blood:
3	chr7:38653519..38655890-chr7:38658744..38661009,2	K562	blood:
4	chr7:38652950..38655031-chr7:38656050..38658738,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10223974	0.82[YRI][hapmap]
rs10227883	0.84[AFR][1000 genomes]
rs10228249	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228286	0.84[AFR][1000 genomes]
rs10228371	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235904	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs10240067	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10249504	0.84[AFR][1000 genomes]
rs10257029	0.84[AFR][1000 genomes]
rs10257782	0.84[AFR][1000 genomes]
rs10278693	0.81[AFR][1000 genomes]
rs10282173	0.84[AFR][1000 genomes]
rs13437692	0.88[LWK][hapmap];0.84[AFR][1000 genomes]
rs13437921	0.81[AFR][1000 genomes]
rs17171416	0.84[AFR][1000 genomes]
rs17171420	0.84[AFR][1000 genomes]
rs17171421	0.83[AFR][1000 genomes]
rs17171422	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17171424	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17346292	0.84[AFR][1000 genomes]
rs1864887	0.88[LWK][hapmap];0.84[AFR][1000 genomes]
rs1864888	0.82[AFR][1000 genomes]
rs28393755	0.83[AFR][1000 genomes]
rs28479083	0.82[AFR][1000 genomes]
rs28504175	0.84[AFR][1000 genomes]
rs28510981	0.84[AFR][1000 genomes]
rs28549342	0.83[AFR][1000 genomes]
rs28578669	0.84[AFR][1000 genomes]
rs28754843	0.83[AFR][1000 genomes]
rs4723774	0.88[LWK][hapmap]
rs73692926	0.84[AFR][1000 genomes]
rs73692927	0.84[AFR][1000 genomes]
rs9986767	0.82[ASW][hapmap];0.94[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv606674	chr7:38619348-38655758	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38653800-38654000	Enhancers	Pancreatic Islets	Pancreatic Islet

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