Variant report

Variant	rs10235906
Chromosome Location	chr7:12192575-12192576
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10227156	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232177	0.88[AFR][1000 genomes]
rs10250890	0.82[ASN][1000 genomes]
rs10260421	1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs12531583	1.00[EUR][1000 genomes]
rs12531743	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12699313	0.91[ASN][1000 genomes]
rs13306984	0.82[ASN][1000 genomes]
rs13307377	0.82[ASN][1000 genomes]
rs1435528	1.00[YRI][hapmap]
rs28852213	1.00[EUR][1000 genomes]
rs59509870	0.82[ASN][1000 genomes]
rs6947317	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6952453	0.82[ASN][1000 genomes]
rs6978380	0.82[ASN][1000 genomes]
rs6978570	0.82[ASN][1000 genomes]
rs6978632	0.82[ASN][1000 genomes]
rs6978650	0.82[ASN][1000 genomes]
rs71533421	0.82[ASN][1000 genomes]
rs7800077	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv887627	chr7:12178793-12227892	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv887628	chr7:12186502-12227892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12191400-12192600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr7:12191400-12192800	Enhancers	Fetal Intestine Large	intestine
3	chr7:12192000-12192800	Enhancers	Fetal Intestine Small	intestine

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