Variant report

Variant	rs7800077
Chromosome Location	chr7:12213303-12213304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1020007	1.00[ASN][1000 genomes]
rs10227156	1.00[EUR][1000 genomes]
rs10235906	1.00[EUR][1000 genomes]
rs10250890	0.89[ASN][1000 genomes]
rs10260421	0.89[ASN][1000 genomes]
rs10950387	1.00[ASN][1000 genomes]
rs10950388	1.00[ASN][1000 genomes]
rs11977383	1.00[ASN][1000 genomes]
rs11977384	1.00[ASN][1000 genomes]
rs11980922	1.00[ASN][1000 genomes]
rs12531583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531743	0.89[ASN][1000 genomes]
rs12534492	1.00[ASN][1000 genomes]
rs12536685	1.00[ASN][1000 genomes]
rs12536705	1.00[ASN][1000 genomes]
rs12537306	1.00[ASN][1000 genomes]
rs12537337	1.00[ASN][1000 genomes]
rs12539665	1.00[ASN][1000 genomes]
rs12699312	1.00[ASN][1000 genomes]
rs12699314	1.00[ASN][1000 genomes]
rs13226228	1.00[ASN][1000 genomes]
rs13226408	1.00[ASN][1000 genomes]
rs13226876	1.00[ASN][1000 genomes]
rs13230297	1.00[ASN][1000 genomes]
rs13232977	1.00[ASN][1000 genomes]
rs13232992	1.00[ASN][1000 genomes]
rs13233005	1.00[ASN][1000 genomes]
rs13233228	1.00[ASN][1000 genomes]
rs13233611	1.00[ASN][1000 genomes]
rs13241051	1.00[ASN][1000 genomes]
rs13241891	1.00[ASN][1000 genomes]
rs13241969	1.00[ASN][1000 genomes]
rs13243169	1.00[ASN][1000 genomes]
rs13244303	1.00[ASN][1000 genomes]
rs13245840	1.00[ASN][1000 genomes]
rs13245891	1.00[ASN][1000 genomes]
rs13306984	0.89[ASN][1000 genomes]
rs13307377	0.89[ASN][1000 genomes]
rs1347436	1.00[ASN][1000 genomes]
rs28852213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59509870	0.89[ASN][1000 genomes]
rs6947317	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6948974	1.00[ASN][1000 genomes]
rs6952453	0.89[ASN][1000 genomes]
rs6967233	1.00[ASN][1000 genomes]
rs6978380	0.89[ASN][1000 genomes]
rs6978570	0.89[ASN][1000 genomes]
rs6978632	0.89[ASN][1000 genomes]
rs6978650	0.89[ASN][1000 genomes]
rs71533421	0.89[ASN][1000 genomes]
rs71533422	1.00[ASN][1000 genomes]
rs7779351	1.00[ASN][1000 genomes]
rs7780991	1.00[ASN][1000 genomes]
rs7783565	1.00[ASN][1000 genomes]
rs7783576	1.00[ASN][1000 genomes]
rs7783947	1.00[ASN][1000 genomes]
rs7784236	1.00[ASN][1000 genomes]
rs7788029	1.00[ASN][1000 genomes]
rs7788225	1.00[ASN][1000 genomes]
rs7788563	1.00[ASN][1000 genomes]
rs7795567	1.00[ASN][1000 genomes]
rs7802974	1.00[ASN][1000 genomes]
rs7804819	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv887627	chr7:12178793-12227892	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv887628	chr7:12186502-12227892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12212200-12213400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links