Variant report

Variant	rs59509870
Chromosome Location	chr7:12177736-12177737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1020007	0.89[ASN][1000 genomes]
rs10227156	0.82[ASN][1000 genomes]
rs10235641	0.90[ASN][1000 genomes]
rs10235906	0.82[ASN][1000 genomes]
rs10250890	1.00[ASN][1000 genomes]
rs10260421	1.00[ASN][1000 genomes]
rs10950387	0.89[ASN][1000 genomes]
rs10950388	0.89[ASN][1000 genomes]
rs11977383	0.89[ASN][1000 genomes]
rs11977384	0.89[ASN][1000 genomes]
rs11979353	0.82[ASN][1000 genomes]
rs11980922	0.89[ASN][1000 genomes]
rs12531583	0.89[ASN][1000 genomes]
rs12531743	1.00[ASN][1000 genomes]
rs12534492	0.89[ASN][1000 genomes]
rs12536685	0.89[ASN][1000 genomes]
rs12536705	0.89[ASN][1000 genomes]
rs12537306	0.89[ASN][1000 genomes]
rs12537337	0.89[ASN][1000 genomes]
rs12539665	0.89[ASN][1000 genomes]
rs12699312	0.89[ASN][1000 genomes]
rs12699314	0.89[ASN][1000 genomes]
rs13226228	0.89[ASN][1000 genomes]
rs13226408	0.89[ASN][1000 genomes]
rs13226876	0.89[ASN][1000 genomes]
rs13230297	0.89[ASN][1000 genomes]
rs13232977	0.89[ASN][1000 genomes]
rs13232992	0.89[ASN][1000 genomes]
rs13233005	0.89[ASN][1000 genomes]
rs13233228	0.89[ASN][1000 genomes]
rs13233611	0.89[ASN][1000 genomes]
rs13241051	0.89[ASN][1000 genomes]
rs13241891	0.89[ASN][1000 genomes]
rs13241969	0.89[ASN][1000 genomes]
rs13243169	0.89[ASN][1000 genomes]
rs13244303	0.89[ASN][1000 genomes]
rs13245840	0.89[ASN][1000 genomes]
rs13245891	0.89[ASN][1000 genomes]
rs13306984	1.00[ASN][1000 genomes]
rs13307377	1.00[ASN][1000 genomes]
rs1347436	0.89[ASN][1000 genomes]
rs28852213	0.89[ASN][1000 genomes]
rs6947317	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6948974	0.89[ASN][1000 genomes]
rs6952453	1.00[ASN][1000 genomes]
rs6967233	0.89[ASN][1000 genomes]
rs6978380	1.00[ASN][1000 genomes]
rs6978570	1.00[ASN][1000 genomes]
rs6978632	1.00[ASN][1000 genomes]
rs6978650	1.00[ASN][1000 genomes]
rs71533421	1.00[ASN][1000 genomes]
rs71533422	0.89[ASN][1000 genomes]
rs7779351	0.89[ASN][1000 genomes]
rs7780991	0.89[ASN][1000 genomes]
rs7783565	0.89[ASN][1000 genomes]
rs7783576	0.89[ASN][1000 genomes]
rs7783947	0.89[ASN][1000 genomes]
rs7784236	0.89[ASN][1000 genomes]
rs7788029	0.89[ASN][1000 genomes]
rs7788225	0.89[ASN][1000 genomes]
rs7788563	0.89[ASN][1000 genomes]
rs7795567	0.89[ASN][1000 genomes]
rs7800077	0.89[ASN][1000 genomes]
rs7802974	0.89[ASN][1000 genomes]
rs7804819	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12177400-12178400	Weak transcription	Hela-S3	cervix

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