Variant report

Variant	rs10235998
Chromosome Location	chr7:25668255-25668256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25661025..25663705-chr7:25665924..25668424,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11973866	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11978307	0.84[EUR][1000 genomes]
rs12534245	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12670768	0.86[JPT][hapmap]
rs1502948	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16873895	0.86[JPT][hapmap]
rs17152030	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17152036	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17152043	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17152054	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17152061	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1818146	0.86[JPT][hapmap]
rs2134479	0.89[EUR][1000 genomes]
rs2214240	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28723687	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2960821	0.87[JPT][hapmap]
rs62454635	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73085996	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2753233	chr7:25655060-25771160	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10235998	TAX1BP1	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25663400-25668800	Enhancers	Fetal Lung	lung
2	chr7:25664800-25669400	Enhancers	Brain Germinal Matrix	brain
3	chr7:25665400-25672800	Weak transcription	Aorta	Aorta
4	chr7:25665600-25669200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:25665600-25670600	Weak transcription	Right Atrium	heart
6	chr7:25666000-25668400	Weak transcription	Primary B cells from cord blood	blood
7	chr7:25666400-25675600	Weak transcription	Ovary	ovary
8	chr7:25666800-25675600	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:25667400-25668400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:25667400-25668600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:25667600-25668400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:25667600-25668600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:25667600-25668600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:25667600-25669400	Weak transcription	Fetal Stomach	stomach
15	chr7:25667800-25668400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:25667800-25668400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:25667800-25668400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:25667800-25668800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr7:25668000-25668400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:25668000-25671400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:25668200-25668400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr7:25668200-25668400	Enhancers	Fetal Brain Male	brain

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