Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25649000..25651876-chr7:25686289..25688697,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10235998	0.89[EUR][1000 genomes]
rs11973866	0.86[ASN][1000 genomes]
rs11978307	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12534245	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12667261	0.87[ASN][1000 genomes]
rs12670768	0.95[JPT][hapmap]
rs1502948	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1553398	0.82[AFR][1000 genomes]
rs1553399	0.82[AFR][1000 genomes]
rs16873895	0.95[JPT][hapmap]
rs16873909	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17152030	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17152036	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17152043	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17152054	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17152061	0.86[ASN][1000 genomes]
rs1818146	0.96[JPT][hapmap]
rs1995438	0.83[ASN][1000 genomes]
rs2214240	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28723687	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2960821	0.95[JPT][hapmap]
rs60277994	0.82[AFR][1000 genomes]
rs62454590	0.82[AFR][1000 genomes]
rs62454635	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73085996	0.87[ASN][1000 genomes]
rs975369	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	esv2753823	chr7:25626156-25655093	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25650600-25651800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:25650600-25651800	Enhancers	Primary T cells from cord blood	blood
3	chr7:25651600-25651800	Enhancers	Thymus	Thymus

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