Variant report

Variant	rs1502948
Chromosome Location	chr7:25653642-25653643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10235998	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10486406	0.81[ASN][1000 genomes]
rs10951078	0.81[ASN][1000 genomes]
rs11973866	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11978307	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12534245	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12667261	0.91[ASN][1000 genomes]
rs12670768	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1354264	0.81[ASN][1000 genomes]
rs1553399	0.81[ASN][1000 genomes]
rs16873895	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs16873899	0.81[ASN][1000 genomes]
rs17152030	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17152036	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17152043	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17152054	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17152061	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1818146	0.96[JPT][hapmap];0.81[ASN][1000 genomes]
rs1882526	0.81[ASN][1000 genomes]
rs1995438	0.87[ASN][1000 genomes]
rs2134479	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2214240	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28723687	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2960821	0.95[JPT][hapmap]
rs62454591	0.81[ASN][1000 genomes]
rs62454592	0.81[ASN][1000 genomes]
rs62454635	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73085996	0.92[ASN][1000 genomes]
rs739622	0.81[ASN][1000 genomes]
rs975369	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	esv2753823	chr7:25626156-25655093	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1020230	chr7:25649344-25783071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25652600-25654400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:25652800-25654400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:25653000-25655800	Enhancers	Fetal Thymus	thymus
4	chr7:25653000-25657200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:25653200-25653800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr7:25653200-25654200	Enhancers	Thymus	Thymus
7	chr7:25653200-25655000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:25653200-25657600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:25653200-25657600	Enhancers	Primary T cells from cord blood	blood
10	chr7:25653400-25656200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:25653400-25659600	Enhancers	Primary B cells from peripheral blood	blood
12	chr7:25653600-25653800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:25653600-25653800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr7:25653600-25653800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr7:25653600-25653800	Enhancers	Fetal Muscle Trunk	muscle
16	chr7:25653600-25654000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr7:25653600-25655400	Enhancers	Right Ventricle	heart
18	chr7:25653600-25655600	Enhancers	Right Atrium	heart
19	chr7:25653600-25655800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:25653600-25655800	Enhancers	Left Ventricle	heart
21	chr7:25653600-25655800	Enhancers	Spleen	Spleen
22	chr7:25653600-25657400	Enhancers	Primary hematopoietic stem cells	blood
23	chr7:25653600-25657600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links