Variant report

Variant	rs10236302
Chromosome Location	chr7:70975960-70975961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10225351	1.00[ASN][1000 genomes]
rs10236816	1.00[ASN][1000 genomes]
rs11974441	1.00[ASN][1000 genomes]
rs11977703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978534	1.00[ASN][1000 genomes]
rs11979250	1.00[ASN][1000 genomes]
rs6970463	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367531	1.00[ASN][1000 genomes]
rs73700935	1.00[ASN][1000 genomes]
rs7802334	1.00[ASN][1000 genomes]
rs7805349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70963600-70980400	Weak transcription	Aorta	Aorta
2	chr7:70967600-70979200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:70967800-70982800	Weak transcription	Ovary	ovary
4	chr7:70970600-70976200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:70973200-70978800	Weak transcription	Fetal Stomach	stomach
6	chr7:70973200-70998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:70973400-70976200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:70973400-70979000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:70973600-70976800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:70973600-70978800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70973800-70979200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:70974000-70976200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:70974000-70981800	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:70974200-70979200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:70975400-70976600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:70975400-70976600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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