Variant report

Variant	rs11978444
Chromosome Location	chr7:70960803-70960804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10225351	1.00[ASN][1000 genomes]
rs10236302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236816	1.00[ASN][1000 genomes]
rs11974441	1.00[ASN][1000 genomes]
rs11977703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978534	1.00[ASN][1000 genomes]
rs11979250	1.00[ASN][1000 genomes]
rs6970463	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73367531	1.00[ASN][1000 genomes]
rs73700935	1.00[ASN][1000 genomes]
rs7802334	1.00[ASN][1000 genomes]
rs7805349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70944000-70962200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70944200-70962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70945400-70962000	Weak transcription	Fetal Stomach	stomach
4	chr7:70946800-70972600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:70947800-70972600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:70948200-70962200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:70952200-70961200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:70953400-70962000	Weak transcription	Ovary	ovary
9	chr7:70953600-70962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:70954600-70962200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:70955000-70962000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70955000-70962200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:70955000-70962400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:70955400-70962400	Weak transcription	Fetal Heart	heart
15	chr7:70956600-70962000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:70956800-70962400	Weak transcription	Fetal Lung	lung
17	chr7:70960600-70961400	Enhancers	Spleen	Spleen
18	chr7:70960600-70963400	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:70960600-70963800	Enhancers	Fetal Muscle Leg	muscle
20	chr7:70960800-70961000	Enhancers	Left Ventricle	heart
21	chr7:70960800-70962400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:70960800-70962800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:70960800-70965000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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