Variant report

Variant	rs6970463
Chromosome Location	chr7:70965242-70965243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10225351	1.00[ASN][1000 genomes]
rs10236302	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10236816	1.00[ASN][1000 genomes]
rs11974441	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11977703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11978444	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11978534	1.00[ASN][1000 genomes]
rs11979250	1.00[ASN][1000 genomes]
rs2906275	1.00[CHB][hapmap]
rs73367531	1.00[ASN][1000 genomes]
rs73700935	1.00[ASN][1000 genomes]
rs7802334	1.00[ASN][1000 genomes]
rs7805349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70946800-70972600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:70947800-70972600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:70961800-70969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:70962800-70966800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70962800-70967200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:70962800-70967200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:70962800-70971800	Weak transcription	Fetal Lung	lung
8	chr7:70963000-70967200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:70963000-70967200	Weak transcription	Ovary	ovary
10	chr7:70963000-70971600	Weak transcription	Fetal Heart	heart
11	chr7:70963000-70972400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:70963000-70972600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:70963400-70972400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:70963600-70972400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:70963600-70980400	Weak transcription	Aorta	Aorta
16	chr7:70964400-70965400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:70964600-70965600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:70965000-70965400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:70965200-70972400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links