Variant report

Variant	rs10236349
Chromosome Location	chr7:140033033-140033034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139875309..139878059-chr7:140031585..140033798,3	K562	blood:

Variant related genes	Relation type
ENSG00000006459	Chromatin interaction
ENSG00000260231	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10239639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1128589	0.97[ASN][1000 genomes]
rs4332050	0.91[ASN][1000 genomes]
rs6964148	0.91[ASN][1000 genomes]
rs7784193	0.92[ASN][1000 genomes]
rs9640226	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140016200-140034000	Weak transcription	Pancreas	Pancrea
2	chr7:140016800-140034200	Weak transcription	Small Intestine	intestine
3	chr7:140017000-140033200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:140017600-140033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:140017600-140034000	Weak transcription	HMEC	breast
6	chr7:140023800-140033800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:140026000-140033800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:140026000-140033800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:140026000-140034400	Weak transcription	Gastric	stomach
11	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:140026200-140033200	Weak transcription	Primary B cells from cord blood	blood
14	chr7:140026200-140033200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:140026200-140033200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:140026200-140033200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:140026200-140033200	Weak transcription	Fetal Intestine Large	intestine
18	chr7:140026200-140033200	Weak transcription	HSMMtube	muscle
19	chr7:140026200-140033400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:140026200-140033400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:140026200-140033400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:140026200-140033600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:140026200-140033800	Weak transcription	Placenta	Placenta
24	chr7:140026200-140034000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:140026200-140034000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:140026200-140034000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:140026200-140034000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:140026200-140034000	Weak transcription	Fetal Kidney	kidney
29	chr7:140026200-140034000	Weak transcription	Right Ventricle	heart
30	chr7:140026200-140034000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:140026200-140034000	Weak transcription	Spleen	Spleen
32	chr7:140026200-140034000	Weak transcription	Dnd41	blood
33	chr7:140026200-140034000	Weak transcription	NHLF	lung
34	chr7:140026200-140034200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr7:140026200-140034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:140026200-140034400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:140026200-140034400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:140026200-140034400	Weak transcription	Hela-S3	cervix
39	chr7:140026200-140034600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr7:140026200-140038200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:140026400-140033400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:140026400-140033400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:140026400-140033400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:140026400-140033800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr7:140026400-140033800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:140026400-140034000	Weak transcription	Fetal Lung	lung
48	chr7:140026400-140034000	Weak transcription	Thymus	Thymus
49	chr7:140026400-140034000	Weak transcription	A549	lung
50	chr7:140026400-140034200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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