Variant report

Variant	rs10239639
Chromosome Location	chr7:140039343-140039344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140033447..140036058-chr7:140037925..140039670,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10236349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1128589	0.91[ASN][1000 genomes]
rs28813703	0.80[ASN][1000 genomes]
rs4332050	0.97[ASN][1000 genomes]
rs6964148	0.97[ASN][1000 genomes]
rs7784193	0.99[ASN][1000 genomes]
rs9640226	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:140026400-140040200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:140026400-140041000	Weak transcription	NHDF-Ad	bronchial
7	chr7:140026400-140041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:140026600-140041000	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:140029800-140042800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:140032200-140042600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:140032800-140043000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:140033000-140040200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:140033400-140043200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:140033400-140048400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:140033600-140040800	Weak transcription	Esophagus	oesophagus
18	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
19	chr7:140033800-140040600	Weak transcription	Colonic Mucosa	Colon
20	chr7:140034800-140041200	Weak transcription	Hela-S3	cervix
21	chr7:140034800-140047600	Weak transcription	GM12878-XiMat	blood
22	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
23	chr7:140035000-140040000	Weak transcription	Fetal Brain Male	brain
24	chr7:140035000-140040200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:140035000-140045200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:140035000-140052400	Weak transcription	Fetal Kidney	kidney
27	chr7:140035000-140074200	Weak transcription	Right Atrium	heart
28	chr7:140035200-140040800	Weak transcription	Fetal Brain Female	brain
29	chr7:140035200-140041200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:140035200-140042600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:140035200-140042600	Weak transcription	Right Ventricle	heart
32	chr7:140035200-140044800	Weak transcription	Brain Angular Gyrus	brain
33	chr7:140035200-140044800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:140035200-140048400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:140035200-140058200	Weak transcription	Small Intestine	intestine
36	chr7:140035200-140060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:140035400-140040400	Weak transcription	HSMMtube	muscle
38	chr7:140035400-140040800	Weak transcription	Spleen	Spleen
39	chr7:140035400-140041000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:140035400-140041000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:140035400-140041200	Weak transcription	HMEC	breast
42	chr7:140035400-140042600	Weak transcription	Aorta	Aorta
43	chr7:140035400-140044800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:140035400-140048600	Weak transcription	HSMM	muscle
45	chr7:140035600-140047400	Weak transcription	Fetal Heart	heart
46	chr7:140035800-140041000	Weak transcription	Brain Hippocampus Middle	brain
47	chr7:140035800-140045000	Weak transcription	NHEK	skin
48	chr7:140035800-140048600	Weak transcription	Brain Substantia Nigra	brain
49	chr7:140036000-140039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:140036000-140040200	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links