Variant report

Variant	rs1128589
Chromosome Location	chr7:140034294-140034295
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140033447..140036058-chr7:140037925..140039670,2	K562	blood:
2	chr7:140033361..140035282-chr7:140035718..140037370,2	K562	blood:
3	chr7:140024951..140026986-chr7:140033594..140036380,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10085561	0.88[JPT][hapmap]
rs10236349	0.97[ASN][1000 genomes]
rs10239639	0.91[ASN][1000 genomes]
rs4332050	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6964148	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7784193	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9640226	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:140026000-140034400	Weak transcription	Gastric	stomach
3	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:140026200-140034400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:140026200-140034400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:140026200-140034400	Weak transcription	Hela-S3	cervix
8	chr7:140026200-140034600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:140026200-140038200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:140026400-140034400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:140026400-140034400	Weak transcription	GM12878-XiMat	blood
13	chr7:140026400-140040200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:140026400-140041000	Weak transcription	NHDF-Ad	bronchial
15	chr7:140026400-140041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:140026600-140041000	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:140028000-140034400	Weak transcription	HepG2	liver
20	chr7:140029800-140042800	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:140030400-140034600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:140030800-140034600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:140031200-140036600	Strong transcription	Primary T cells from cord blood	blood
24	chr7:140031600-140036800	Strong transcription	Fetal Intestine Small	intestine
25	chr7:140031600-140036800	Strong transcription	Fetal Stomach	stomach
26	chr7:140031800-140034400	Weak transcription	HSMM	muscle
27	chr7:140032000-140034600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:140032000-140036200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr7:140032200-140034600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:140032200-140037200	Strong transcription	Osteobl	bone
31	chr7:140032200-140042600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:140032400-140037200	Strong transcription	Brain Germinal Matrix	brain
33	chr7:140032600-140036600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:140032800-140035400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:140032800-140036000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:140032800-140036000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr7:140032800-140036600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:140032800-140036800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:140032800-140043000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:140033000-140035000	Strong transcription	Fetal Brain Male	brain
41	chr7:140033000-140036400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr7:140033000-140036600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:140033000-140036600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:140033000-140040200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:140033200-140035000	Enhancers	Brain Hippocampus Middle	brain
46	chr7:140033200-140035200	Enhancers	Brain Cingulate Gyrus	brain
47	chr7:140033200-140035200	Strong transcription	Fetal Brain Female	brain
48	chr7:140033200-140035400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr7:140033200-140035400	Strong transcription	Aorta	Aorta
50	chr7:140033200-140035400	Strong transcription	HSMMtube	muscle

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