Variant report

Variant	rs10237440
Chromosome Location	chr7:137570544-137570545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137569917..137572586-chr7:137572838..137575553,3	K562	blood:
2	chr7:137545557..137547633-chr7:137570311..137573208,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10231564	1.00[AMR][1000 genomes]
rs28375653	1.00[AMR][1000 genomes]
rs28428178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28510326	1.00[AMR][1000 genomes]
rs28571026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9886231	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137533800-137575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137555600-137583200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:137556000-137570800	Strong transcription	Rectal Mucosa Donor 31	rectum
4	chr7:137556000-137573600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:137557000-137570600	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr7:137557800-137583800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:137558400-137571600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr7:137558400-137579200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:137558800-137588400	Weak transcription	Stomach Mucosa	stomach
10	chr7:137559400-137575200	Strong transcription	HepG2	liver
11	chr7:137560000-137570600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:137560000-137570800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:137561000-137577000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:137562600-137570600	Strong transcription	Primary T cells from cord blood	blood
15	chr7:137562600-137570600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr7:137562600-137570800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:137562600-137570800	Strong transcription	Ovary	ovary
18	chr7:137562600-137571200	Strong transcription	Primary B cells from cord blood	blood
19	chr7:137563200-137572200	Strong transcription	Colonic Mucosa	Colon
20	chr7:137563400-137570600	Strong transcription	Left Ventricle	heart
21	chr7:137563400-137570800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr7:137563400-137575200	Weak transcription	Psoas Muscle	Psoas
23	chr7:137564600-137570600	Strong transcription	Brain Cingulate Gyrus	brain
24	chr7:137564600-137570600	Strong transcription	Brain Substantia Nigra	brain
25	chr7:137564600-137575400	Strong transcription	Placenta Amnion	Placenta Amnion
26	chr7:137564800-137570600	Strong transcription	Brain Hippocampus Middle	brain
27	chr7:137565200-137574200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:137566400-137570600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:137566400-137571000	Weak transcription	Fetal Brain Male	brain
30	chr7:137567200-137570800	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:137567200-137570800	Strong transcription	Fetal Lung	lung
32	chr7:137567200-137570800	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:137567200-137571600	Weak transcription	Fetal Brain Female	brain
34	chr7:137567200-137583800	Strong transcription	Liver	Liver
35	chr7:137567400-137570600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr7:137567400-137570800	Strong transcription	Lung	lung
37	chr7:137567400-137571000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr7:137567400-137571000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:137567400-137571000	Strong transcription	Fetal Muscle Leg	muscle
40	chr7:137567400-137571200	Strong transcription	Spleen	Spleen
41	chr7:137567400-137571600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:137567400-137572400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr7:137567400-137580200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:137567400-137583400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr7:137567400-137583800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:137567400-137584000	Strong transcription	Fetal Intestine Large	intestine
47	chr7:137567600-137570600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
48	chr7:137567600-137570600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:137567600-137570800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr7:137567600-137571000	Strong transcription	Fetal Stomach	stomach

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