Variant report

Variant	rs28510326
Chromosome Location	chr7:137568215-137568216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137561745..137565223-chr7:137565375..137570123,4	K562	blood:
2	chr7:137562154..137564910-chr7:137565375..137570111,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10231564	1.00[AMR][1000 genomes]
rs10237440	1.00[AMR][1000 genomes]
rs28375653	1.00[AMR][1000 genomes]
rs28428178	1.00[AMR][1000 genomes]
rs28571026	1.00[AMR][1000 genomes]
rs9886231	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137533800-137575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137551200-137569400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:137555600-137583200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr7:137556000-137570800	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr7:137556000-137573600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:137557000-137570600	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr7:137557800-137583800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:137558400-137571600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr7:137558400-137579200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:137558800-137588400	Weak transcription	Stomach Mucosa	stomach
11	chr7:137559400-137568600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:137559400-137575200	Strong transcription	HepG2	liver
13	chr7:137560000-137570600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:137560000-137570800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:137561000-137577000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:137562600-137570600	Strong transcription	Primary T cells from cord blood	blood
17	chr7:137562600-137570600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr7:137562600-137570800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:137562600-137570800	Strong transcription	Ovary	ovary
20	chr7:137562600-137571200	Strong transcription	Primary B cells from cord blood	blood
21	chr7:137563000-137568600	Genic enhancers	HSMM	muscle
22	chr7:137563000-137568800	Genic enhancers	NHDF-Ad	bronchial
23	chr7:137563200-137570400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:137563200-137572200	Strong transcription	Colonic Mucosa	Colon
25	chr7:137563400-137570600	Strong transcription	Left Ventricle	heart
26	chr7:137563400-137570800	Strong transcription	Stomach Smooth Muscle	stomach
27	chr7:137563400-137575200	Weak transcription	Psoas Muscle	Psoas
28	chr7:137563800-137570200	Genic enhancers	Muscle Satellite Cultured Cells	--
29	chr7:137564600-137570600	Strong transcription	Brain Cingulate Gyrus	brain
30	chr7:137564600-137570600	Strong transcription	Brain Substantia Nigra	brain
31	chr7:137564600-137575400	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr7:137564800-137570200	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr7:137564800-137570600	Strong transcription	Brain Hippocampus Middle	brain
34	chr7:137565000-137570200	Strong transcription	Colon Smooth Muscle	Colon
35	chr7:137565200-137568800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:137565200-137574200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:137565600-137570000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr7:137566000-137568600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:137566000-137568600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr7:137566000-137570400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr7:137566400-137568600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:137566400-137570200	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr7:137566400-137570200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:137566400-137570600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:137566400-137571000	Weak transcription	Fetal Brain Male	brain
46	chr7:137567000-137568800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:137567000-137568800	Genic enhancers	HUVEC	blood vessel
48	chr7:137567000-137569400	Weak transcription	Small Intestine	intestine
49	chr7:137567000-137570400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:137567200-137568800	Strong transcription	Fetal Kidney	kidney

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