Variant report

Variant	rs28375653
Chromosome Location	chr7:137605230-137605231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137602936..137605750-chr7:137611145..137614286,3	K562	blood:
2	chr17:57917876..57919842-chr7:137604891..137607469,2	MCF-7	breast:
3	chr7:137602934..137605506-chr7:137607486..137609542,3	K562	blood:

Variant related genes	Relation type
ENSG00000182158	Chromatin interaction
ENSG00000199004	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10231564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237440	1.00[AMR][1000 genomes]
rs28428178	1.00[AMR][1000 genomes]
rs28510326	1.00[AMR][1000 genomes]
rs28571026	1.00[AMR][1000 genomes]
rs9886231	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv5964	chr7:137599451-137616300	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137584200-137612000	Weak transcription	Fetal Brain Male	brain
2	chr7:137585000-137605800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:137585200-137606200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:137588800-137606200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:137588800-137615400	Weak transcription	Stomach Mucosa	stomach
6	chr7:137588800-137618400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:137588800-137620200	Weak transcription	Dnd41	blood
8	chr7:137589000-137606200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:137589600-137613600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr7:137592000-137611200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:137592200-137609400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:137592400-137606000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:137592400-137615000	Weak transcription	Hela-S3	cervix
14	chr7:137594200-137606000	Weak transcription	Gastric	stomach
15	chr7:137594200-137610200	Weak transcription	Brain Angular Gyrus	brain
16	chr7:137594600-137611200	Weak transcription	Thymus	Thymus
17	chr7:137594600-137618000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:137597400-137610400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:137597600-137610800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:137598400-137605600	Weak transcription	A549	lung
21	chr7:137598400-137610200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:137598800-137610200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:137598800-137611200	Weak transcription	Esophagus	oesophagus
24	chr7:137598800-137617000	Weak transcription	Small Intestine	intestine
25	chr7:137599600-137611200	Weak transcription	Spleen	Spleen
26	chr7:137599800-137614800	Weak transcription	HMEC	breast
27	chr7:137600000-137611200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:137600000-137612400	Weak transcription	Lung	lung
29	chr7:137600200-137606000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:137600200-137606000	Weak transcription	Left Ventricle	heart
31	chr7:137600200-137618400	Weak transcription	Fetal Thymus	thymus
32	chr7:137600600-137605800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:137600600-137605800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:137600600-137605800	Weak transcription	HUVEC	blood vessel
35	chr7:137600800-137605600	Weak transcription	Adipose Nuclei	Adipose
36	chr7:137600800-137605800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:137600800-137606000	Weak transcription	Primary T cells from cord blood	blood
38	chr7:137600800-137606000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:137600800-137606000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:137600800-137606000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:137600800-137608200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:137600800-137610200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:137600800-137610200	Weak transcription	NHEK	skin
44	chr7:137600800-137611200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:137600800-137611200	Weak transcription	Colonic Mucosa	Colon
46	chr7:137600800-137611200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:137600800-137612600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:137601000-137605600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:137601000-137606000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:137601000-137607600	Weak transcription	NH-A	brain

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